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ben-silke / biol3209

This repo contains the code for the undertaking of the biol3209 subject.
BSD 3-Clause "New" or "Revised" License
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Experiment plan #41

Open ben-silke opened 1 year ago

ben-silke commented 1 year ago

Assessment of gene identification:

Data: Soil Reference genomes programs to test: prodigal [installed] genemark2S [not installed]

asssment of ortholog identification

data_one quest4ortholog data

Programs to test: justOrthologs [installed and python3] blast best reciprocal hits

ben-silke commented 1 year ago

genemark2s installed and run on base NC_000913.fasta

ben-silke commented 1 year ago

funnily; genemark2s and prodigal seem to have more trouble running on other genes...