I am trying to use the clik python wrapper, which is required for the MCMC code Cobaya, but I encounter an error when importing the module:
>> import clikCannot use clik wrapper (cause = '/lib64/libk5crypto.so.3: undefined symbol: EVP_KDF_ctrl, version OPENSSL_1_1_1b')Cannot use clik_lensing wrapper (cause = '/lib64/libk5crypto.so.3: undefined symbol: EVP_KDF_ctrl, version OPENSSL_1_1_1b')
I've tried to install it with and without MKL, on a new Conda environment each time, using different python versions, and also installing numpy, satrapy and cython using Conda install and python -m pip install --user --upgrade <package>, but I always get the same error when I import the clik module.
I've noticed a strange behavior, sometimes the error does not happen if I first import clik, i.e. without importing other modules prior to it. Also, this behavior occurs on the linux OS, which is where I need to use it, but not when testing on my personal MacOS machine.
Below are all the inputs-outputs I think were relevant and the configuration part. If more information is required please let me know and I will try to supply it.
Thanks,
Tal
>>> import clik
>>>
(cobaya_env) talabadi@sge236:~/codes/cobaya_packages/code/planck/clik-main->python
Python 3.11.2 (main, Mar 27 2023, 23:42:44) [GCC 11.2.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import numpy
>>> import clik
Cannot use clik wrapper (cause = '/lib64/libk5crypto.so.3: undefined symbol: EVP_KDF_ctrl, version OPENSSL_1_1_1b')
Cannot use clik_lensing wrapper (cause = '/lib64/libk5crypto.so.3: undefined symbol: EVP_KDF_ctrl, version OPENSSL_1_1_1b')
>>>
(cobaya_env) talabadi@sge236:~/codes/cobaya_packages/code/planck/clik-main->python
Python 3.11.2 (main, Mar 27 2023, 23:42:44) [GCC 11.2.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import clik
>>>
(cobaya_env) talabadi@sge236:~/codes/cobaya_packages/code/planck/clik-main->which openssl
~/anaconda3/envs/cobaya_env/bin/openssl
(cobaya_env) talabadi@sge236:~/codes/cobaya_packages/code/planck/clik-main->openssl version
OpenSSL 1.1.1t 7 Feb 2023
(cobaya_env) talabadi@sge236:~/codes/cobaya_packages/code/planck/clik-main->python waf configure --lapack_mkl=$MKLROOT --install_all_deps
Setting top to : /gpfs0/elyk/users/talabadi/codes/cobaya_packages/code/planck/clik-main
Setting out to : /gpfs0/elyk/users/talabadi/codes/cobaya_packages/code/planck/clik-main/build
get clik version : clik_16.0b1-2-g63c889f3aa9c
Checking for program 'gcc, cc' : /bin/gcc
Checking for program 'ar' : /bin/ar
Check gcc version : 8.5.0
Compile a test code with gcc : yes
Setting architecture flag to : ['-m64']
Checking for program 'ifort' : /opt/intel/compilers_and_libraries_2020.4.304/linux/bin/intel64/ifort
Checking for program 'xiar' : /bin/ar
Checking for program 'ar' : /bin/ar
Check ifort version : 19.1.3.304
Compile a test code with ifort : yes
retrieve ifort link line : ok
ifort link line : -L/opt/intel/compilers_and_libraries_2020.4.304/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2020.4.304/linux/compiler/lib/intel64_lin/ -L/gpfs0/system/intel_cls2020/compilers_and_libraries_2020.4.304/linux/compiler/lib/intel64_lin -L/lib -L/lib64 -liomp5 -lintlc -lifcoremt -lifport -lirc -lsvml -limf -lpthread
Setting install root to : /gpfs0/elyk/users/talabadi/codes/cobaya_packages/code/planck/clik-main
Setting install bin directory to : /gpfs0/elyk/users/talabadi/codes/cobaya_packages/code/planck/clik-main/bin
Setting install lib directory to : /gpfs0/elyk/users/talabadi/codes/cobaya_packages/code/planck/clik-main/lib
Setting install include directory to : /gpfs0/elyk/users/talabadi/codes/cobaya_packages/code/planck/clik-main/include
check compatibility of ifort and gcc versions : ok
Checking for program 'python' : /gpfs0/elyk/users/talabadi/anaconda3/envs/cobaya_env/bin/python
Checking for python version : 3.11.2
python-config : /gpfs0/elyk/users/talabadi/anaconda3/envs/cobaya_env/bin/python3.11-config
Asking python-config for pyembed '--cflags --libs --ldflags --embed' flags : yes
Testing pyembed configuration : yes
Checking for library dl : yes
checking for RTLD_DEFAULT in dl : no
compile with debug option : OFF
Checking for program 'pmc-config' : not found
Checking for library pmc : not found
Check mkl version : 10.3
create specific mkl lib : /gpfs0/elyk/users/talabadi/codes/cobaya_packages/code/planck/clik-main/lib/libclik_mkl.so
Checking for library ['clik_mkl', 'iomp5', 'pthread', 'm'] : yes
checking for function 'dposv' : yes
checking for function 'dtrsv' : yes
checking for function 'dpotrf' : yes
checking for function 'dpotrs' : yes
checking for function 'dpotri' : yes
checking for function 'dtrtri' : yes
checking for function 'dtrmm' : yes
checking for function 'dtrmv' : yes
checking for function 'dgeqrf' : yes
checking for function 'dormqr' : yes
checking for function 'dsyev' : yes
checking for function 'dgesvd' : yes
checking for function 'dsymv' : yes
checking for function 'dgemv' : yes
checking for function 'dgemm' : yes
checking for function 'dsyrk' : yes
checking for function 'dsyr2k' : yes
checking for function 'daxpy' : yes
checking for function 'dtrsm' : yes
checking for function 'dsymm' : yes
checking for function 'dsyr' : yes
checking for function 'ddot' : yes
checking for function 'dsyevd' : yes
checking for function 'dlamch' : yes
checking for function 'dsyevr' : yes
Checking for library ['cfitsio'] : yes
checking for function 'fits_init_cfitsio' : yes
Python version allows for automatic install : yes (3.11.2)
Checking for program 'python' : /gpfs0/elyk/users/talabadi/anaconda3/envs/cobaya_env/bin/python
Checking python module 'numpy' : ok
Checking python module 'astropy' : ok
Checking for program 'python' : /gpfs0/elyk/users/talabadi/anaconda3/envs/cobaya_env/bin/python
Checking python module 'cython' : ok
Checking python module 'cython' : ok
Checking cython version (>0.28) : 0.29.34
Checking for program 'cython' : /gpfs0/elyk/users/talabadi/anaconda3/envs/cobaya_env/bin/cython
Add plugin : 'cibsz' : ok
Add plugin : 'basic' : ok
Add plugin : 'dust' : ok
Add plugin : 'basic_P' : ok
Add plugin : 'systematics' : ok
Add plugin : 'ffp8' : ok
Hi,
I am trying to use the
clikpython wrapper, which is required for the MCMC code Cobaya, but I encounter an error when importing the module:>> import clikCannot use clik wrapper (cause = '/lib64/libk5crypto.so.3: undefined symbol: EVP_KDF_ctrl, version OPENSSL_1_1_1b')Cannot use clik_lensing wrapper (cause = '/lib64/libk5crypto.so.3: undefined symbol: EVP_KDF_ctrl, version OPENSSL_1_1_1b')I've tried to install it with and without
MKL, on a new Conda environment each time, using different python versions, and also installingnumpy,satrapyandcythonusingConda installandpython -m pip install --user --upgrade <package>, but I always get the same error when I import theclikmodule. I've noticed a strange behavior, sometimes the error does not happen if I first importclik, i.e. without importing other modules prior to it. Also, this behavior occurs on the linux OS, which is where I need to use it, but not when testing on my personal MacOS machine.Below are all the inputs-outputs I think were relevant and the configuration part. If more information is required please let me know and I will try to supply it.
Thanks, Tal