benedekrozemberczki / ClusterGCN

A PyTorch implementation of "Cluster-GCN: An Efficient Algorithm for Training Deep and Large Graph Convolutional Networks" (KDD 2019).
GNU General Public License v3.0
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ppi with clusterdata #19

Closed CFF-Dream closed 4 years ago

CFF-Dream commented 4 years ago

`import torch import time import torch.nn as nn import torch.nn.functional as F import os.path as osp from torch_geometric.datasets import PPI from ppi_cluster import ClusterData, ClusterLoader from torch_geometric.nn import SAGEConv, ChebConv from sklearn.metrics import f1_score

path = osp.join(osp.dirname(osp.realpath(file)), '..', 'data', 'PPI') dataset = PPI(path) train_dataset = PPI(path, split='train') #20graphs val_dataset = PPI(path, split='val') #2graphs test_dataset = PPI(path, split='test') #2graphs

print('Partioning the graph... (this may take a while)') train_dataset_list = [] val_dataset_list = [] test_dataset_list = [] dataset_list = [] train_dataset_index = test_dataset_index = val_dataset_index = 0

for data in train_dataset: cluster_data = ClusterData(data, 'train', train_dataset_index, num_parts=2, recursive=False, save_dir=dataset.processed_dir) loader = ClusterLoader(cluster_data, batch_size=20, shuffle=True, num_workers=0) train_dataset_list.append(loader) dataset_list.append(loader) train_dataset_index += 1

for data in test_dataset: cluster_data = ClusterData(data, 'test', test_dataset_index, num_parts=2, recursive=False, save_dir=dataset.processed_dir) loader = ClusterLoader(cluster_data, batch_size=20, shuffle=True, num_workers=0) test_dataset_list.append(loader) dataset_list.append(loader) test_dataset_index += 1

for data in val_dataset: cluster_data = ClusterData(data, 'val', val_dataset_index, num_parts=2, recursive=False, save_dir=dataset.processed_dir) loader = ClusterLoader(cluster_data, batch_size=20, shuffle=True, num_workers=0) val_dataset_list.append(loader) dataset_list.append(loader) val_dataset_index += 1

print('Done!')`