benedictpaten jobTree issues

benedictpaten / jobTree

Python based pipeline management software for clusters (but checkout toil: https://github.com/BD2KGenomics/toil, its successor)

MIT License

24 stars 18 forks source link

issues

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Add Slurm support

#42 aaronk opened 8 years ago
0
Grid engine support for terabyte (T) MEMTOT output from qhost, and cpu specifications

#41 cooketho opened 9 years ago
1
make test error

#40 cooketho opened 9 years ago
0
Rename to toil

#39 cket closed 9 years ago
0
Dag rebased

#38 hannes-ucsc closed 9 years ago
1
Development+mesos

#37 benedictpaten closed 9 years ago
0
Pluggable job store

#36 benedictpaten closed 9 years ago
0
Improved attribute checking in targets

#35 cket closed 9 years ago
0
job failures not correctly reducing retry count

#34 benedictpaten opened 9 years ago
0
restarting jobTree the parameter changes have no effect

#33 benedictpaten opened 9 years ago
0
Should make package pip installable

#32 benedictpaten opened 9 years ago
0
Sonlib dependency is unnecessary

#31 benedictpaten opened 9 years ago
0
Documentation examples should use the neater function specification

#30 benedictpaten opened 9 years ago
0
Documentation/code separation of script tree from everything else is confusing

#29 benedictpaten opened 9 years ago
0
periodically hangs entire parasol hub when listing jobs

#28 joelarmstrong opened 9 years ago
2
Crash getting global temp dir when restarting jobtree

#27 adamnovak opened 9 years ago
2
entire jobTree crashes when a job's pickle file isn't written correctly

#26 joelarmstrong opened 9 years ago
6
Tmp dir location

#25 ifiddes closed 9 years ago
10
don't want to pass parser here, it doesn't work

#24 ifiddes closed 9 years ago
4
Please limit the permissions for the tmp_* directories build by `make test`

#23 dentearl opened 9 years ago
0
Please reconsider dependency on sonLib

#22 dentearl closed 9 years ago
1
Change time format

#21 adamnovak closed 9 years ago
2
Fixing crash when running with argparse

#20 adamnovak closed 10 years ago
0
Job Tree does not re-build the stats.xml file frequently enough

#19 dentearl closed 10 years ago
2
LogLevel options are not included in the jobtree options group, leading to confusing help messages

#18 dentearl closed 10 years ago
1
argparse functionality broken by 76a4328

#17 dentearl closed 10 years ago
5
Not leaking file descriptors

#16 adamnovak closed 11 years ago
1
Changing around IO redirection

#15 adamnovak closed 11 years ago
4
Inheritable IO redirection, tighter CPU allocation, and a miscelanious test fix

#14 adamnovak closed 11 years ago
1
setup.py for jobTree

#13 adamnovak closed 11 years ago
0
LSF batch system for jobTree

#12 tk2 closed 11 years ago
0
Deep thoughts (by Glenn)

#11 adamewing closed 10 years ago
1
Relative imports don't always work in jobTree

#10 dentearl opened 11 years ago
1
Eliminate STDERR output on non-error jobs.

#9 kellrott opened 12 years ago
0
When --batchSystem != singleMachine, --maxThreads should spark an error

#8 dentearl closed 10 years ago
2
Stalling behavior with --maxThreads --maxJobs

#7 dentearl closed 10 years ago
1
jobTree support for argparse

#6 dentearl closed 12 years ago
2
When do the tests end?

#5 dzerbino closed 10 years ago
3
Eliminate the cryptic use of colors to hide status

#4 dentearl closed 10 years ago
3
Updated grid engine

#3 dzerbino closed 12 years ago
2
errors in "make test"

#2 thirtyeggs closed 10 years ago
1
Makes multijob independent of the paths set in .cshrc or .bashrc

#1 cvaske closed 13 years ago
0