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benedictpaten / marginAlign

UCSC Nanopore
MIT License
43 stars 13 forks source link

Reference fasta file #22

Closed icymiktreize closed 8 years ago

icymiktreize commented 8 years ago

Hi, I managed to map my FASTQ file with human genome with marginAlign. When trying with reference fasta file I created, it did not work. This file contains IUPAC code beside A; T; G; C. I just wonder if that's the problem. Cheers

mitenjain commented 8 years ago

Hello,

Sorry for the delay. Currently, marginAlign does not support nucleotide letters besides A's, C's, G's, and T's. We are working on adding some support on this in the next release.

Thank you.