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benedictpaten / marginAlign

UCSC Nanopore
MIT License
42 stars 13 forks source link

marginAlign: command not found #34

Closed cliu32 closed 6 years ago

cliu32 commented 6 years ago

I followed the instructions and everything seems to be fine up to "make test". It was successful without using the virtualenv. And then when I tried to call marginAlign, I got "command not found". Not sure what I missed and I'd appreciate any help. Many thanks!

mitenjain commented 6 years ago

Hello,

Are you giving the entire /path/to/marginAlign or is marginAlign added to your default path? We recommend using virtualenv because it encompasses all dependencies.

Best regards, Miten

cliu32 commented 6 years ago

Thanks for the response! I could not call it when I was in the margin base directory. I can see marginAlign right there, and the make test worked well without the virtualenv. Any thoughts?

Chang

On Oct 20, 2017, at 3:30 PM, Miten Jain notifications@github.com wrote:

Hello,

Are you giving the entire /path/to/marginAlign or is marginAlign added to your default path? We recommend using virtualenv because it encompasses all dependencies.

Best regards, Miten

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or mute the thread.

mitenjain commented 6 years ago

Have you tried running it as ./marginAlign from the base? That may force the executable.

cliu32 commented 6 years ago

./marginAlign works. Thank you!