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benedictpaten / marginAlign

UCSC Nanopore
MIT License
43 stars 13 forks source link

marginAlign error, jobTree #35

Closed ccp3 closed 6 years ago

ccp3 commented 7 years ago

Hello! After running the marginAlign code as directly stated, I received several long error messages, such as "The job seems to have left a log file, indicating failure: /path/to/directory/jobTree/jobs/job" and "raise RuntimeError("Invalid FASTA character, ASCII code = \'%d\', found in input sequence %s" % (ord(i), name))". Could you please provide suggestions on how I could fix this? Thanks!

mitenjain commented 7 years ago

Does your reference FASTA file contain abnormal characters? And are you using FASTQ file for reads?

mitenjain commented 6 years ago

Hello, just checking if you resolved this?

ccp3 commented 6 years ago

Yes, all resolved!

Thank you!

On Tue, Apr 10, 2018 at 12:15 AM, Miten Jain notifications@github.com wrote:

Hello, just checking if you resolved this?

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