make test fail

[LotusWang0723]

After I run make test, it is reported that there is no vcf module

File "./tests/tests.py", line 4, in from margin.marginCallerLib import vcfRead File "/data/ltwang/software/marginAlign/src/margin/marginCallerLib.py", line 1, in import pysam, sys, os, collections, vcf, datetime ImportError: No module named vcf Makefile:5: recipe for target 'test' failed make: *** [test] Error 1

how can I solve this problem?

[mitenjain]

Hello,

Are you using a virtualenv? That will allow you to contain all dependencies (listed in requirement.txt).

Thank you.

[LotusWang0723]

Thanks a lot. I forgot to use virtualenv. Now make test can run correctly.