benedictpaten / marginAlign

UCSC Nanopore
MIT License
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Adding identity print output to test #9

Closed benedictpaten closed 9 years ago

benedictpaten commented 9 years ago

As a simple test of correctness, it would be helpful if each test in tests/test.py that creates a sam file were to report the avg. identity / avg. coverage / total number of alignments in the sam file.

benedictpaten commented 9 years ago

It would also be good if each test reported how long it took to run marginAlign(Call), so that we can do some basic performance evaluation.

benedictpaten commented 9 years ago

Done.