Tutorial Issues

[multimeric]

The tutorial PDF is very helpful, I just noticed some issues in it:

• For the Conserved Columns section we have but I think it should be 1 + 1 in red and blue in order to get 2/9
• For Non-Gaps, the equation seems to be calculating the proportion of gaps, the opposite of what it says:
• Finally as mentioned elsewhere, I think the benchmark script no longer exists:

[a1ultima]

I noticed your tutorial on using pyMSA: https://github.com/benhid/pyMSA/blob/master/resources/tutorial-pymsa.pdf

refers to a script that is actually missing from the repo (https://github.com/benhid/pyMSA/blob/master) itself, specifically a python file called: benchmark.py

In the tutorial you use it as follows: benchmark.py --input ~/msa.txt

However, benchmark.py does not exist anywhere in this repo.