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benibenj / vscode-pythonCpp

A Visual Studio Code Debug Extension for debugging mixed Python and C++ code. The extension starts a Python debug session and attaches the C++ debugger to it. This extension is useful for debugging Python programs that call functions from shared libraries (.so/.dll).
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Conda crashed after debug #33

Open mhshen opened 4 months ago

mhshen commented 4 months ago

After debugging a python/C++ project, I created a new zsh window in vscode, and conda environment fails to activate with the following error message.

# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "/home/mh/miniconda3/lib/python3.12/site-packages/conda/exception_handler.py", line 17, in __call__
        return func(*args, **kwargs)
               ^^^^^^^^^^^^^^^^^^^^^
      File "/home/mh/miniconda3/lib/python3.12/site-packages/conda/cli/main.py", line 109, in main_sourced
        print(activator.execute(), end="")
              ^^^^^^^^^^^^^^^^^^^
      File "/home/mh/miniconda3/lib/python3.12/site-packages/conda/activate.py", line 206, in execute
        return getattr(self, self.command)()
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/mh/miniconda3/lib/python3.12/site-packages/conda/activate.py", line 171, in activate
        builder_result = self.build_activate(self.env_name_or_prefix)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/mh/miniconda3/lib/python3.12/site-packages/conda/activate.py", line 349, in build_activate
        return self._build_activate_stack(env_name_or_prefix, False)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/mh/miniconda3/lib/python3.12/site-packages/conda/activate.py", line 439, in _build_activate_stack
        deactivate_scripts = self._get_deactivate_scripts(old_conda_prefix)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/home/mh/miniconda3/lib/python3.12/site-packages/conda/activate.py", line 771, in _get_deactivate_scripts
        for entry in os.scandir(join(prefix, "etc", "conda", "deactivate.d"))
                                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "<frozen posixpath>", line 76, in join
    TypeError: expected str, bytes or os.PathLike object, not NoneType

`$ /home/mh/miniconda3/bin/conda shell.posix activate base`

  environment variables:
                 CIO_TEST=<not set>
                CONDA_EXE=/home/mh/miniconda3/bin/conda
           CONDA_PREFIX_2=/home/mh/miniconda3/envs/cpp
           CONDA_PREFIX_3=/home/mh/miniconda3
         CONDA_PYTHON_EXE=/home/mh/miniconda3/bin/python
               CONDA_ROOT=/home/mh/miniconda3
              CONDA_SHLVL=4
           CURL_CA_BUNDLE=<not set>
          LD_LIBRARY_PATH=/home/mh/software/gurobi1100/linux64/lib:/usr/local/cuda-12.4/lib64
               LD_PRELOAD=<not set>
                     PATH=/usr/local/cuda-12.4/bin:/home/mh/.vscode-
                          server/cli/servers/Stable-
                          dc96b837cf6bb4af9cd736aa3af08cf8279f7685/server/bin/remote-cli:/usr/lo
                          cal/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/
                          local/games:/snap/bin
       REQUESTS_CA_BUNDLE=<not set>
            SSL_CERT_FILE=/usr/lib/ssl/certs/ca-certificates.crt

     active environment : None
            shell level : 4
       user config file : /home/mh/.condarc
 populated config files : /home/mh/.condarc
          conda version : 24.4.0
    conda-build version : not installed
         python version : 3.12.2.final.0
                 solver : libmamba (default)
       virtual packages : __archspec=1=skylake
                          __conda=24.4.0=0
                          __cuda=12.4=0
                          __glibc=2.35=0
                          __linux=6.5.0=0
                          __unix=0=0
       base environment : /home/mh/miniconda3  (writable)
      conda av data dir : /home/mh/miniconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/mh/miniconda3/pkgs
                          /home/mh/.conda/pkgs
       envs directories : /home/mh/miniconda3/envs
                          /home/mh/.conda/envs
               platform : linux-64
             user-agent : conda/24.4.0 requests/2.31.0 CPython/3.12.2 Linux/6.5.0-35-generic ubuntu/22.04.4 glibc/2.35 solver/libmamba conda-libmamba-solver/24.1.0 libmambapy/1.5.8
                UID:GID : 1000:1000
             netrc file : /home/mh/.netrc
           offline mode : False

An unexpected error has occurred. Conda has prepared the above report.
If you suspect this error is being caused by a malfunctioning plugin,
consider using the --no-plugins option to turn off plugins.

Example: conda --no-plugins install <package>

Alternatively, you can set the CONDA_NO_PLUGINS environment variable on
the command line to run the command without plugins enabled.

Example: CONDA_NO_PLUGINS=true conda install <package>
sevdesk-ryanp commented 4 months ago

+1 also running into this issue starting last week

After mode debugging, this is due to an interaction between my packagemanager and vscode-cli in particular. Only triggered when opening vscode from terminal. Most likely due to the fact that a virtualenv is already engaged and the integrated terminal is inherited.