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benjamin-chan / AEAfterBreastCaACT

Risks of Long-term Adverse Events in Breast Cancer Patients Treated with Adjuvant Chemotherapy
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[CogImp] Incorporate feedback from Kathleen about tests where higher values are worse #7

Open benjamin-chan opened 8 years ago

benjamin-chan commented 8 years ago

Hi Kathleen,

Can you take a quick look at the attached spreadsheet and double check that I’ve identified the timed tests correctly (labeled TRUE in column A)? This is to make sure I get the sign correct when I do subtraction. Thanks, and enjoy your holiday.

See tests.csv

benjamin-chan commented 8 years ago

From: Van Dyk, Kathleen [mailto:KVanDyk@mednet.ucla.edu] Sent: Wednesday, December 02, 2015 9:24 AM To: Benjamin Chan Subject: RE: NCI Cognitive Impairment MS

Here you go, I added a new column for changes. “Not timed” just means the measure is accuracy (higher is better). Let me know if you have any questions! Looking forward to getting some time to review the results later today.

See [tests.csv kvd.xlsx](https://github.com/benjamin-chan/AEAfterBreastCaACT/blob/master/CognitiveImpairment/tests.csv kvd.xlsx)

benjamin-chan commented 8 years ago

Sent: Wednesday, December 02, 2015 8:57 AM To: Benjamin Chan; 'Ayse Tezcan' Subject: RE: cognitive impairment preview

Hi Ben,

It’s McDonald 2012, attached – also attaching the n-back data which was an appendix. I’ll send you the updated spreadsheet for reversing scores shortly, for n-back it looks like they used % accuracy not reaction time so higher values are better.

benjamin-chan commented 8 years ago

See commit 1297ef00f7d99c756f028b2081163989c0ef61d8

benjamin-chan commented 8 years ago

Would like to have final verification from Kathleen:

isHigherWorse cognitiveDomain cognitiveTest 1 TRUE Attn/Wkg Mem/Concentration CPT: Distractibility, Reaction Time 2 TRUE Attn/Wkg Mem/Concentration CPT: Vigilance, Reaction Time 3 TRUE Attn/Wkg Mem/Concentration DKEFS Trails: Letter Sequencing, sec 4 TRUE Attn/Wkg Mem/Concentration DKEFS Trails: Number Sequencing, sec 5 TRUE Attn/Wkg Mem/Concentration TMT part A time 6 TRUE Attn/Wkg Mem/Concentration Trail Making A 7 TRUE Attn/Wkg Mem/Concentration Trail Making Part A 8 TRUE Attn/Wkg Mem/Concentration Trails A 9 TRUE Exec Fxn DKEFS Stroop: Color-Word 10 TRUE Exec Fxn DKEFS Trails: Number-Letter Switching, sec 11 TRUE Exec Fxn DKEFS: Stroop, Set Shifting 12 TRUE Exec Fxn TMT part B time 13 TRUE Exec Fxn Trail Making B 14 TRUE Exec Fxn Trail Making Part B 15 TRUE Exec Fxn Trails B 16 TRUE Information Proc Speed DKEFS Stroop: Color Patch Naming 17 TRUE Information Proc Speed DKEFS Stroop: Word Reading, sec 18 TRUE Information Proc Speed DKEFS Trails: Visual Scanning in Seconds 19 TRUE Motor Speed DKEFS Trails: Motor Speed, sec 20 TRUE Motor Speed Grooved Peg Board time 21 TRUE Motor Speed Grooved Pegboard Test: Left Hand, sec 22 TRUE Motor Speed Grooved Pegboard Test: Right Hand, sec 23 TRUE Motor Speed Grooved pegboard dominant hand 24 TRUE Motor Speed Grooved pegboard nondominant hand 25 TRUE Motor Speed Pegboard - Dom Hand 26 TRUE Motor Speed Pegboard - Nondom Hand