Remaining things to do

[benkeser]

@bdwilliamson

Report:

• [ ] add table/bullet list to executive summary, with: # sequences pulled from CATNAP, # sequences with complete data used in analysis, class balance (if binary), other descriptive statistics for continuous data, etc. (BW)
• [ ] place stars next to ranks with statistically significant p-values in Table 1.3 (BW)
• [X] Make sure that Figure 2.1 (and others like it) have spaces in the correct places in caption (DB)
• [ ] Change feature groups (y-axis in vimp plot) to have sensible names; make sure that x-axis and title don't get cut off (BW)
• [x] Legends on sens/resis plots (DB)
• [ ] make nomenclature consistent in all areas of report (e.g., biological importance everywhere instead of "population importance") (BW)

Documentation:

• [ ] bookdown vignette(s) (DB)
• [ ] other documentation? (DB)

[bdwilliamson]

• [x] bulleted list in executive summary
• [x] place stars next to ranks with statistically significant p-values in Table 1.3
• [x] Change feature groups (y-axis in vimp plot) to have sensible names
• [x] Make sure x-axis and title of vimp plots don't get cut off
• [x] Make nomenclature consistent in all areas of report

[benkeser]

Is vignette all that is left of this to do?

[bdwilliamson]

Yes -- I couldn't edit your list so I had to make my own.