In single-end data, with lower denoising, obitab will not see the *_HS.fa file

bensutherland / eDNA_metabarcoding

Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)

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In single-end data, with lower denoising, obitab will not see the *_HS.fa file #6

Open bensutherland opened 6 years ago

bensutherland commented 6 years ago

We do not do the internal removal for the denoising with single-end data due to the large number of unique amplicons. Because of this, we do not have an *_HS.fa output file, and therefore the standard obitab script will not work on SE data.