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bensutherland / eDNA_metabarcoding

Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)
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The cp -l script isn't well defined enough, #7

Open bensutherland opened 6 years ago

bensutherland commented 6 years ago

cp -l 02_raw_data/your_file_R1_001.fastq 03_merged/your_file_ali.fq

Input fille is 'sample_S1_L001_R1_001.fastq' and the expected in the merged is 03_merged/sample_S1_L001_ali.fq