bensutherland simple_pop_stats issues

bensutherland / simple_pop_stats

A short analysis of population statistics given specific inputs

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issues

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Need per locus missing data function similar to per individual missing data function

#35 bensutherland closed 3 weeks ago
1
Function not operating correctly until sourced again manually

#34 bensutherland closed 3 weeks ago
2
drop_loci is not removing all monomorphic loci

#33 bensutherland closed 1 year ago
0
Sorting error in annotate_rubias

#32 bensutherland closed 1 year ago
1
Ghostscript not in path

#31 erondeau opened 3 years ago
0
Capitalization of headers - more flexibility?

#30 erondeau opened 3 years ago
0
Additional packages pdfcrop and ghostscript in baseline benchmark markdown

#29 erondeau closed 3 years ago
3
Repunit filenames need to be constant for all species and added as variable to launch script

#28 bensutherland opened 3 years ago
1
Reduce width of simulation table and make portrait from landscape

#27 bensutherland opened 3 years ago
0
Left justify changes and notes tables in benchmark

#26 bensutherland opened 3 years ago
0
Benchmark PDF name

#25 bensutherland opened 3 years ago
0
Benchmark PDF is sent to github folder not target

#24 bensutherland opened 3 years ago
0
PPN file example needed in README for Realistic Fishery Scenario

#23 bensutherland opened 3 years ago
0
Realistic Fishery Scenario does not show all populations, only those set in the ppn file with non-zero

#22 bensutherland opened 3 years ago
0
Order by repunits in plot_summarize_100_sim() not yet working for microsatellites

#21 bensutherland opened 3 years ago
0
Automate building of the folder structure for starting a new benchmark folder

#20 bensutherland opened 3 years ago
0
Automate copy paste rename of benchmark into the reference database folder

#19 bensutherland opened 3 years ago
0
Minimum number of genotypes/individual

#18 JanineSupernault opened 3 years ago
0
pca_from_genind.r not using default colour option.

#17 erondeau opened 3 years ago
1
Need stand-alone function to screen rubias file for a percentage or total number missing loci (micro and rubias)

#16 bensutherland opened 3 years ago
0
Baseline benchmarks: how to deal with same baseline but multiple grouping levels

#15 bensutherland opened 3 years ago
0
LaTeX installation instructions needed on README

#14 bensutherland closed 3 years ago
2
Need method to convert geneclass/genepop mix file to rubias input

#13 bensutherland opened 3 years ago
0
genepop_to_rubias() not describing properly when collections are duplicated.

#12 erondeau opened 3 years ago
1
drop_pops() not actually dropping pops

#11 erondeau opened 3 years ago
3
on_network variable not being recognizing, causes select_species to fail

#10 bensutherland opened 3 years ago
1
Benchmark folder structure is not yet constructed to handle both microsatellite and SNP data

#9 bensutherland opened 3 years ago
2
full_sim.r no longer reporting #collections, rather only what was supposed to be n_per_repunit

#8 erondeau closed 4 years ago
3
Error at diploid loci in 100% simulations

#7 bensutherland closed 4 years ago
1
Need to save output filenames with whether SNP or msat so don't overwrite previous file

#6 bensutherland opened 5 years ago
1
Need to output amova results to file, not just as object in R env

#5 bensutherland opened 5 years ago
0
Printing from within a function produces empty PDF

#4 bensutherland closed 4 years ago
2
Need to only retain one data point per pairwise contrast in compare_physical_genetic dist

#3 bensutherland opened 5 years ago
0
PCA_from_genind fails if there is a typo in the colour dataframe

#2 bensutherland opened 5 years ago
0
PCA from genind fails if colour file not set

#1 bensutherland opened 5 years ago
0