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berenslab / MorphoPy

GNU General Public License v3.0
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Fix gaussian window import path for current SciPy releases #131

Open musicinmybrain opened 2 months ago

musicinmybrain commented 2 months ago

Old: https://docs.scipy.org/doc/scipy-0.14.0/reference/generated/scipy.signal.gaussian.html

New: https://docs.scipy.org/doc/scipy/reference/generated/scipy.signal.windows.gaussian.html#scipy.signal.windows.gaussian

Fixes:

$ python3 -m venv _e
$ . _e/bin/activate
(_e) $ pip install morphopy
(_e) $ morphopy --help
Traceback (most recent call last):
  File "/home/ben/fedora/devel/python-morphopy/_e/bin/morphopy", line 5, in <module>
    from morphopy.MorphoPy import main
  File "/home/ben/fedora/devel/python-morphopy/_e/lib64/python3.12/site-packages/morphopy/MorphoPy.py", line 13, in <module>
    from morphopy.computation import file_manager
  File "/home/ben/fedora/devel/python-morphopy/_e/lib64/python3.12/site-packages/morphopy/computation/file_manager.py", line 3, in <module>
    import morphopy.neurontree.NeuronTree as nt
  File "/home/ben/fedora/devel/python-morphopy/_e/lib64/python3.12/site-packages/morphopy/neurontree/NeuronTree.py", line 19, in <module>
    from morphopy.neurontree.utils import (
  File "/home/ben/fedora/devel/python-morphopy/_e/lib64/python3.12/site-packages/morphopy/neurontree/utils.py", line 8, in <module>
    from scipy.signal import convolve2d, gaussian
ImportError: cannot import name 'gaussian' from 'scipy.signal' (/home/ben/fedora/devel/python-morphopy/_e/lib64/python3.12/site-packages/scipy/signal/__init__.py)