berenslab / MorphoPy

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Key Error with 'dendritic length' #90

Closed Visdoom closed 6 years ago

Visdoom commented 6 years ago
m = morphopy.Morph(data='data/C4.swc')
m.processing()
m.summary()

results in

---------------------------------------------------------------------------
KeyError                                  Traceback (most recent call last)
/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/base.py in get_loc(self, key, method, tolerance)
   2441             try:
-> 2442                 return self._engine.get_loc(key)
   2443             except KeyError:

pandas/_libs/index.pyx in pandas._libs.index.IndexEngine.get_loc (pandas/_libs/index.c:5280)()

pandas/_libs/index.pyx in pandas._libs.index.IndexEngine.get_loc (pandas/_libs/index.c:5126)()

pandas/_libs/hashtable_class_helper.pxi in pandas._libs.hashtable.PyObjectHashTable.get_item (pandas/_libs/hashtable.c:20523)()

pandas/_libs/hashtable_class_helper.pxi in pandas._libs.hashtable.PyObjectHashTable.get_item (pandas/_libs/hashtable.c:20477)()

KeyError: 'dendritic_length'

During handling of the above exception, another exception occurred:

KeyError                                  Traceback (most recent call last)
<ipython-input-4-0db5d921a66f> in <module>()
----> 1 m.summary()

~/Projects/MorphoPy/morphopy/_morph.py in summary(self, save_to, print_results)
    114         # path length
    115 
--> 116         dendritic = self.df_paths['dendritic_length']
    117         dendritic_sum = dendritic.sum()
    118         dendritic_mean = dendritic.mean()

/usr/local/lib/python3.5/dist-packages/pandas/core/frame.py in __getitem__(self, key)
   1962             return self._getitem_multilevel(key)
   1963         else:
-> 1964             return self._getitem_column(key)
   1965 
   1966     def _getitem_column(self, key):

/usr/local/lib/python3.5/dist-packages/pandas/core/frame.py in _getitem_column(self, key)
   1969         # get column
   1970         if self.columns.is_unique:
-> 1971             return self._get_item_cache(key)
   1972 
   1973         # duplicate columns & possible reduce dimensionality

/usr/local/lib/python3.5/dist-packages/pandas/core/generic.py in _get_item_cache(self, item)
   1643         res = cache.get(item)
   1644         if res is None:
-> 1645             values = self._data.get(item)
   1646             res = self._box_item_values(item, values)
   1647             cache[item] = res

/usr/local/lib/python3.5/dist-packages/pandas/core/internals.py in get(self, item, fastpath)
   3588 
   3589             if not isnull(item):
-> 3590                 loc = self.items.get_loc(item)
   3591             else:
   3592                 indexer = np.arange(len(self.items))[isnull(self.items)]

/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/base.py in get_loc(self, key, method, tolerance)
   2442                 return self._engine.get_loc(key)
   2443             except KeyError:
-> 2444                 return self._engine.get_loc(self._maybe_cast_indexer(key))
   2445 
   2446         indexer = self.get_indexer([key], method=method, tolerance=tolerance)

pandas/_libs/index.pyx in pandas._libs.index.IndexEngine.get_loc (pandas/_libs/index.c:5280)()

pandas/_libs/index.pyx in pandas._libs.index.IndexEngine.get_loc (pandas/_libs/index.c:5126)()

pandas/_libs/hashtable_class_helper.pxi in pandas._libs.hashtable.PyObjectHashTable.get_item (pandas/_libs/hashtable.c:20523)()

pandas/_libs/hashtable_class_helper.pxi in pandas._libs.hashtable.PyObjectHashTable.get_item (pandas/_libs/hashtable.c:20477)()

KeyError: 'dendritic_length'