search

berenslab / umi-normalization

Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
https://doi.org/10.1186/s13059-021-02451-7
GNU Affero General Public License v3.0
40 stars 2 forks source link

Integration #3

Open torgheh opened 2 years ago

torgheh commented 2 years ago

Hello,

Thanks for your great work. I've been following the development of your method and its' implantation in Scanpy and can't wait to start using it in my future analyses.

I would like to know however, if you have any recommendation of how this method could be used in the integration step of single cell RNA seq analysis? Seurat's SCTransform offers an integration workflow that uses SCT normalized dataset.

Thanks.