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bergmanlab
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drosophila-transposons
Drosophila transposable element canonical sequences
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Get data from Yu et al (2011)
#15
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cbergman
opened
11 years ago
cbergman
commented
11 years ago
reference is
http://www.ncbi.nlm.nih.gov/pubmed/21523651
4414-bp element, non-autonomous LTR element
related to D. yakuba Pifo_I:
http://www.girinst.org/protected/repbase_extract.php?access=Pifo_I
state that insertion site is at 18,929,626 on chr2R
cbergman
commented
11 years ago
emailed corresponding author 2013-6-17
cbergman
commented
11 years ago
Data sent by Bo Yu on 2013-6-20, file is in
https://github.com/bergmanlb/transposons/tree/master/personal_communications/yu
cbergman
commented
11 years ago
related to Tirant
good hits on chrX in nest that currently has no homology to known TEs
TE is in - orientation in Yu pers. com.
incomplete element
cbergman
commented
11 years ago
need to revcomp, map to genome and try to find complete element