Investigate adding Tangram to the pipeline

bergmanlab / mcclintock

Meta-pipeline to identify transposable element insertions using next generation sequencing data

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Investigate adding Tangram to the pipeline #12

Closed nelson42 closed 2 years ago

nelson42 commented 10 years ago

The paper for Tangram has been released with the system located at: https://github.com/jiantao/Tangram I will look in to including this in the pipeline now that MOSAIK is not required for input.

cbergman commented 9 years ago

TANGRAM paper is out: http://www.la-press.com/toolbox-for-mobile-element-insertion-detection-on-cancer-genomes-article-a4445-abstract
specifically say runs using BAM as input