Compile papers using McClintock pipeline - Githubissues

bergmanlab / mcclintock

Meta-pipeline to identify transposable element insertions using next generation sequencing data

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Compile papers using McClintock pipeline #40

Closed cbergman closed 1 year ago

cbergman commented 6 years ago

Ilyin et al (2017): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5570135/
Nelson et al (2017) https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5555480/
Ryazansky et al (2017): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5407775/
Bergman et al (2017): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5602686/
Treepong et al (2018): https://academic.oup.com/bioinformatics/article/34/22/3795/5040324?login=true

cbergman commented 4 years ago

Duc et al (2019): https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1736-x
Bast et al (2019): https://elifesciences.org/articles/48548
Gramazio et al (2019): https://www.frontiersin.org/articles/10.3389/fpls.2019.01220/full
Vendrell-Mir et al (2019): https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-019-0197-9
Kordyukova et al (2020): https://academic.oup.com/nar/article/48/1/141/5625537

cbergman commented 4 years ago

Oggenfuss et al (2021): https://elifesciences.org/articles/69249

cbergman commented 4 years ago

Jiménez‐Ruiz et al (2020): https://acsess.onlinelibrary.wiley.com/doi/full/10.1002/tpg2.20010

cbergman commented 4 years ago

Ilyin et al (2020): https://link.springer.com/article/10.1007/s00412-020-00738-5

cbergman commented 3 years ago

Taylor et al (2022): https://academic.oup.com/g3journal/article/12/11/jkac246/6730751
Han et al (2021): https://academic.oup.com/genetics/article/219/2/iyab113/6321957

cbergman commented 2 years ago

Han et al (2021): https://doi.org/10.1093/genetics/iyac077
Yan et al (2022): https://www.sciencedirect.com/science/article/pii/S259034622100184X
Han et al (2022): https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkac794/6717830
Daigle et al (2022): https://academic.oup.com/g3journal/article/12/11/jkac214/6670796

cbergman commented 2 years ago

Navarro-Dominguez et al. (2022): https://elifesciences.org/articles/78981
Serra et al. (2022): https://academic.oup.com/hr/article/doi/10.1093/hr/uhac111/6586540?login=true
Hays et al. (2022): https://www.biorxiv.org/content/10.1101/2022.05.11.491585v1.full

cbergman commented 1 year ago

Hiltunen et al (2022): https://www.pnas.org/doi/full/10.1073/pnas.2208575119
Scarlett et al (2022): https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac146/6758249
Hemmer et al (2022): https://www.biorxiv.org/content/10.1101/2022.11.25.518008v1

cbergman commented 4 months ago

Huang et al (2024): https://www.nature.com/articles/s41467-024-49250-9