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bergmanlab / ngs_te_mapper

Software for detecting transposable element insertions from next-generation sequencing data
BSD 3-Clause "New" or "Revised" License
14 stars 6 forks source link

Add ability to make predictions based on paired-end information #15

Closed cbergman closed 3 years ago

cbergman commented 10 years ago

Currently, ngs_te_mapper make predictions for reference and non-reference insertions solely from split-read information. Adding the ability to make predictions from paired-end information, and use split-read information to refine paired-end predictions could improve its performance.