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berkeley-stat159 / project-iota

BSD 3-Clause "New" or "Revised" License
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make dataset doesn't work #142

Closed rossbar closed 8 years ago

rossbar commented 8 years ago

When I run make dataset, I get the following error (I'm working remotely so I had to use a screen grab, sorry for the poor quality):

iota_error

Please push fixes ASAP. If you are not planning to fix this, apply the wontfix label to this issue and we will proceed manually

Jay4869 commented 8 years ago
_20151215224606

@rossbar I did the same code in VM, but it works to me, but I will take careful look on it

rossbar commented 8 years ago

I did not run the mv command, it was part of the make dataset call. Can you verify that make dataset works from a clean build? In other words, if you clone your project into a new, empty directory and try to run make dataset is it successful?

Jay4869 commented 8 years ago

we are working on it

2015-12-15 23:39 GMT-08:00 Ross Barnowski notifications@github.com:

I did not run the mv command, it was part of the make dataset call. Can you verify that make dataset works from a clean build? In other words, if you clone your project into a new, empty directory and try to run make dataset is it successful?

— Reply to this email directly or view it on GitHub https://github.com/berkeley-stat159/project-iota/issues/142#issuecomment-165023730 .

rossbar commented 8 years ago

Any progress? Let me know how much longer you expect to work on it. I'd like to be able to start grading ASAP

Jay4869 commented 8 years ago

@rossbar We already fixed it, so it should be worked, but if it still doesn't work, please proceed and fix it for us please

Thanks in advanced Team-iota

rossbar commented 8 years ago

When I pulled there were no new additions. I still get errors when trying to download the data:

make dataset 
cd data && make
make[1]: Entering directory `/media/ross/DATAPART1/stats159/projects/project-iota/data'
wget http://openfmri.s3.amazonaws.com/tarballs/ds115_sub001-005.tgz
--2015-12-17 16:23:05--  http://openfmri.s3.amazonaws.com/tarballs/ds115_sub001-005.tgz
Resolving openfmri.s3.amazonaws.com (openfmri.s3.amazonaws.com)... 54.231.49.88
Connecting to openfmri.s3.amazonaws.com (openfmri.s3.amazonaws.com)|54.231.49.88|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 4513139859 (4.2G) [application/x-tar]
Saving to: ‘ds115_sub001-005.tgz.1’

100%[====================================>] 4,513,139,859 24.5MB/s   in 2m 11s 

2015-12-17 16:25:16 (33.0 MB/s) - ‘ds115_sub001-005.tgz.1’ saved [4513139859/4513139859]

tar -xvzf ds115_sub001-005.tgz sub001
sub001/
sub001/BOLD/
sub001/BOLD/task001_run001/
sub001/BOLD/task001_run001/bold.nii.gz

gzip: stdin: unexpected end of file
tar: Unexpected EOF in archive
tar: Unexpected EOF in archive
tar: Error is not recoverable: exiting now
make[1]: *** [data] Error 2
make[1]: Leaving directory `/media/ross/DATAPART1/stats159/projects/project-iota/data'
make: *** [dataset] Error 2
rossbar commented 8 years ago

Note that this was after a fresh clone of the project

Jay4869 commented 8 years ago

@rossbar I have already fixed it and I ran the couple times on the SAVIO which is school server. If you still have trouble to make, please let know I would like to stop by your office tmr

Best

rossbar commented 8 years ago

I was able to re-clone the project and successfully run the build/analysis chain. Thanks for taking the time to work this out :+1:

Jay4869 commented 8 years ago

That is a good news to me. Thank you for giving us time to fix those

2015-12-18 7:15 GMT-08:00 Ross Barnowski notifications@github.com:

I was able to re-clone the project and successfully run the build/analysis chain. Thanks for taking the time to work this out [image: :+1:]

— Reply to this email directly or view it on GitHub https://github.com/berkeley-stat159/project-iota/issues/142#issuecomment-165801360 .