WIP: Clean up

[jarrodmillman]

As I review the code and text of your final project today, I will make edits and clean things up as I go. In particular, I will fix the formatting on all the docstrings so that the autogenerated API documentation looks nice. You can see the the API docs here: http://berkeley-stat222.github.io/mousestyles/api/mousestyles.html

I will also try to make some changes to make the report more visually consistent. For example, if you look at the table of contents (http://berkeley-stat222.github.io/mousestyles/report/index.html) of the report you will see that some section headings have colons in them and some don't, some sections are capitalized ("Statement of Problem") and some are not ("Statement of problem").

I will also fix any warnings that are produced when building the documentation. Finally, I will remove some code that doesn't appear to have been used or improved:

• intervals.py
• pca_hcm_data.py
• strain_classification.py

This should make it clearer what code is yours as well as improve the test coverage.

[coveralls]

Coverage increased (+3.9%) to 81.926% when pulling 71dd979beb5917630b1c4bf5490975d3f056bc12 on jarrodmillman:clean-up into c0715a03ea34f3fb9a9dff952c33c70d75fd2f1a on berkeley-stat222:master.

[coveralls]

Coverage increased (+3.9%) to 81.862% when pulling 244800605d6480893c567999cfdbff70c40bfa2b on jarrodmillman:clean-up into c0715a03ea34f3fb9a9dff952c33c70d75fd2f1a on berkeley-stat222:master.

[coveralls]

Coverage increased (+3.9%) to 81.862% when pulling 244800605d6480893c567999cfdbff70c40bfa2b on jarrodmillman:clean-up into c0715a03ea34f3fb9a9dff952c33c70d75fd2f1a on berkeley-stat222:master.