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berman-lab / ymap

YMAP - Yeast Mapping Analysis Pipeline : An online pipeline for the analysis of yeast genomic datasets.
MIT License
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Alternate restriction enzymes for use in ddRADseq processing. #10

Open darrenabbey opened 9 years ago

darrenabbey commented 9 years ago

One collaborator used a ddRADseq protocol variant with a different pair of enzymes. An earlier version of Ymap included the simulated genome digestion using the relevant enzymes, but the resulting data was sufficiently different to require significant updates to the ddRADseq module for effective visualization.

The collaborator is setting up to perform the implemented ddRADseq protocol on their strains, so datasets will become available for head-to-head comparison between the protocol outputs needed for effective updating of module.

vladimirg commented 8 years ago

@darrenabbey , who was the collaborator?

darrenabbey commented 8 years ago

Mathew Anderson. It has been some time since I discussed this project with him and I don't know if the hypothesized datasets ever materialized.