Very big data sets choke processing when hapmap is specified

berman-lab / ymap

YMAP - Yeast Mapping Analysis Pipeline : An online pipeline for the analysis of yeast genomic datasets.

MIT License

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Very big data sets choke processing when hapmap is specified #17

Closed vladimirg closed 9 years ago

vladimirg commented 9 years ago

E.g., Feng's strain FY376, which is 5.32 GB in size, doesn't complete analysis when a hapmap is specified for it. It seems that the putative_SNPs_from_hapmap_in_child.py script is taking a very long time, perhaps too long.

vladimirg commented 9 years ago

Fixed in d986b76, and follow-up issues up to c64f44d.