The string 'fastq' in project names breaks analysis

berman-lab / ymap

YMAP - Yeast Mapping Analysis Pipeline : An online pipeline for the analysis of yeast genomic datasets.

MIT License

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The string 'fastq' in project names breaks analysis #24

Closed vladimirg closed 8 years ago

vladimirg commented 8 years ago

Specifically in FASTQ_2_trimming.sh (but also maybe elsewhere), the 'fastq' string is special and is replaced, so that the the final trimmed files get a bad destination name.

ghost commented 8 years ago

Changed files /scripts_Modules/FASTQ_1_trimming.sh and /scripts_Modules/FASTQ_2_trimming.sh making trimmed and residue name to replace last occurrence of .fastq