search

berman-lab / ymap

YMAP - Yeast Mapping Analysis Pipeline : An online pipeline for the analysis of yeast genomic datasets.
MIT License
6 stars 6 forks source link

Junk errors in Apache log #31

Open ghost opened 8 years ago

ghost commented 8 years ago
  1. Done In /scripts_genomes/genome.install_1.php on line 47 - variable outputName is undefined probably should be $condensedLogOutput Note: I have changed the permission to 0744 , since before the chmod added reading and execute permissions to the group and others, and reading permission for the group and others should be sufficent (maybe even consider removing the reading permissions for others).
  2. In php/uploader/index.php - line 8 - the key - "key" is undefined
  3. In /scripts_genomes/genome.install_1.php - lines 186-188 - $sizeFile_1 probably should be $genomePath.$sizeFile_1, currently it's probably trying to open in the current directory
  4. In /scripts_genomes/genome.install_5.php - line 60 - the variable filename is undefined
  5. DONE In panel.manageDataset.php - lines 215-216 - trying to open upload_size_2.txt, that file doesn't exist in single end read, also trying to open when displaying project that is during installation
  6. In process_input_files.genome.php - line 169 - $output is undefined, the variable is derived from ymap/scripts_genomes/genome.install_1.php line 117 probably should send $output2 since $output is already closed at this stage. note also that the file upload_size_1.txt is generated twice in this script once using $output (and then closing it) and second time using $output2 (and then closing it), either way the $output that is been sent to process_input_files.genome.php is a closed resource