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berman-lab / ymap

YMAP - Yeast Mapping Analysis Pipeline : An online pipeline for the analysis of yeast genomic datasets.
MIT License
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Whole-genome analysis crashes when chromosomes in reference genome are too short #34

Closed vladimirg closed 7 years ago

vladimirg commented 8 years ago

Example: including mtDNA in C. ablicans reference genome. May be connected to lack of any reads in the chromosome, however this was also observed in another genome, Cyberlindnera fabianii, which currently has quite a few short (<=10,000 bp) contigs.

darrenabbey commented 8 years ago

YMAP may have difficulty generating figures if the chromosomes are too small. This issue was noted very early on in development and I thought I had resolved it in a robust manner. Exactly where the pipeline is crashing would help clarify if this is still an issue.

vladimirg commented 7 years ago

@GuyKha , please add the commit that fixes this issue and close it :)

ghost commented 7 years ago

Fixed by commit 644c15a4dab4166af30ffa79496ba47572cb6b5e