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bernatgel / karyoploteR

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
https://bernatgel.github.io/karyoploter_tutorial/
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CNV heatmap clustering and metadata #144

Open auroramaurizio opened 1 year ago

auroramaurizio commented 1 year ago

Dear all, thank you for this super useful, and handy package!

Have you ever thought about a function to cluster (by sample) the CNV profile of multiple samples and add metadata?

I'm already making beautiful aggregated CNV representations with karyoploteR plotCopyNumberCalls + plotCopyNumberSummary. Adding a dendrogram and metadata color bars to these plots would be awesome!

Something like this https://github.com/FJD-CEPH/aCNViewer#dendrograms-and-heatmaps or this https://github.com/adammaikai/cnv-heatmap.

Best, Aurora

bernatgel commented 10 months ago

Hi @auroramaurizio

I'm glad you find the package useful. Adding the capability to draw dendograms to karyoploteR is on the TODO list and has been for quite some time. It's quite more complex than it would seem, though, so I don't know when we will try again to do it.

I'm afraid you'll need patience for this.

Bernat

gevro commented 3 months ago

Hello, I'm curious if this has been implemented?