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bernatgel / karyoploteR

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
https://bernatgel.github.io/karyoploter_tutorial/
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Error message trying to plot the Gallus gallus karyotype #83

Open ines3281 opened 4 years ago

ines3281 commented 4 years ago

Trying to plot the Gallus gallus karyotype using data from the library(BSgenome.Ggallus.UCSC.galGal6) I get an error message:

kp <- plotKaryotype(genome="galGal6") [1] "galGal6" Loading ideogram... Error in normArgTrack(track, trackids) : Unknown track: cytoBand cytoBand informatin is not available, only get ranges. Loading ranges... Done Error in [[<-(*tmp*, name, value = character(0)) : 0 elements in value to replace 464 elements It´s probably my mistake. I do not have experience working with R. Thanks in advance.

tottlefields commented 3 years ago

Hi, I am having this exact same error trying to plot the canFam3 genome... did anybody ever figure out the issue please?

kp <- plotKaryotype(genome = "canFam3") [1] "canFam3" Loading ideogram... Error in normArgTrack(track, trackids) : Unknown track: cytoBand cytoBand informatin is not available, only get ranges. Loading ranges... Done Error in [[<-(*tmp*, name, value = character(0)) : 0 elements in value to replace 3268 elements