Enhancement: Implement additional parameters for the Variant Recoder in `variantRecoder.js`, with `vcf_string=1` as the default parameter. - Githubissues

berntpopp / variant-linker

MIT License

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Enhancement: Implement additional parameters for the Variant Recoder in `variantRecoder.js`, with `vcf_string=1` as the default parameter. #13

Closed berntpopp closed 2 weeks ago

berntpopp commented 2 weeks ago

Current Behavior

Currently, the Variant Recoder function does not accept additional parameters, limiting the flexibility of the API request.

Proposed Solution

Default Parameter: Set vcf_string=1 as the default parameter for the Variant Recoder API request.
Additional Parameters: Allow users to specify additional parameters via command-line arguments.
Merge Parameters: Merge the default and user-specified parameters for the API request.

Acceptance Criteria

[x] Implement vcf_string=1 as the default parameter in variantRecoder.js.
[x] Add a command-line argument to allow users to specify additional parameters for the Variant Recoder.
[x] Ensure the API request merges default and user-specified parameters correctly.
[ ] Update the documentation to describe the new functionality.
[ ] Add tests to verify the functionality of additional parameters.