Enhance the tool to include hgvs=1 as a default parameter for vep_params. This will ensure that HGVS notations are always included in the VEP annotation results, providing more comprehensive data by default.
Acceptance Criteria
Modify the vep_params default to include hgvs=1 along with the existing defaults.
Ensure the parameter is correctly merged with user-provided vep_params.
Update tests to verify that hgvs=1 is included in the VEP API requests.
Update the documentation to reflect this new default parameter.
Description
Enhance the tool to include
hgvs=1as a default parameter forvep_params. This will ensure that HGVS notations are always included in the VEP annotation results, providing more comprehensive data by default.Acceptance Criteria
vep_paramsdefault to includehgvs=1along with the existing defaults.vep_params.hgvs=1is included in the VEP API requests.