Feature request: Integrate local versions of VEP (Variant Effect Predictor) and Variant Recoder into `variant-linker` - Githubissues

berntpopp / variant-linker

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Feature request: Integrate local versions of VEP (Variant Effect Predictor) and Variant Recoder into `variant-linker` #3

Open berntpopp opened 3 months ago

berntpopp commented 3 months ago

Proposed Solution

Introduce flags in the CLI to allow users to select between using local versions or REST APIs of VEP and Variant Recoder.
Add configuration options for users to specify paths or settings for the local versions.
Implement logic to switch between local and API versions based on user preference.

Acceptance Criteria

[ ] Flags for using local VEP and Variant Recoder are implemented.
[ ] Configuration options for local versions are functional.
[ ] Logic to switch between local and API modes is robust and well-tested.
[ ] Documentation is updated to guide users on how to use this new feature.