Description:
Add an option to annotate variants based on region or gene match from input files. This feature will allow users to provide additional files containing regions or gene lists to match against the variants for more comprehensive annotations.
Acceptance Criteria:
Implement a command-line option to specify an input file containing regions or genes.
Enhance the annotation process to match variants against the specified regions or genes.
Ensure that the tool can handle multiple input formats for regions or genes (e.g., BED, GFF).
Update the documentation to include examples and usage instructions for this new option.
Description:
Add an option to annotate variants based on region or gene match from input files. This feature will allow users to provide additional files containing regions or gene lists to match against the variants for more comprehensive annotations.
Acceptance Criteria: