Changes variant recalibration step for Indels and SNPs to use a tool with hard coded resource values to work around an issue with toil and passing arrays (https://github.com/DataBiosphere/toil/issues/2814).
Increases the memory requirements for the mark duplicate steps.
Changes variant recalibration step for Indels and SNPs to use a tool with hard coded resource values to work around an issue with toil and passing arrays (https://github.com/DataBiosphere/toil/issues/2814). Increases the memory requirements for the mark duplicate steps.