bespin-workflows / exomeseq-gatk4

Whole Exome Sequencing in CWL using GATK4
MIT License
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save mark duplicate metric reports #20

Closed johnbradley closed 4 years ago

johnbradley commented 4 years ago

Changes main workflow to saves metric reports created by the mark duplicate step into a new output directory named metrics-markduplicates. Changes preprocessing workflow to save the metric reports as well. Before this change the mark duplicate metric reports were being generated but discarded.

Fixes #16