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beyondpie / CEMBA_wmb_snATAC

Whole mouse brain snATAC seq analysis
MIT License
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cellType cov weighted loss function is ambiguous #18

Closed GitHUB-ZYD closed 1 month ago

GitHUB-ZYD commented 2 months ago

image hello. i am ambiguous while read the paper with the loss function. And no code in directory 11.deeplearning.

What data was used to calculate the covariance matrix between different cell types? The y_true which used to calculate the loss ? the y_true of each epoch? Or y_true of the entire dataset ? shold diagonal elements need to be removed to calculate the mean of CoV for each cell type?

beyondpie commented 1 month ago

@GitHUB-ZYD Hi there, sorry for the late response.

  1. Please check the deep learning codes here: https://github.com/yal054/mba_dl_model. I will later upload the deep learning codes in this repo.

  2. For your questions, I will invite my colleague, who implemented the deep learning model, to answer them. I will also talk with him, and address the questions directly here. Thanks!

Songpeng

GitHUB-ZYD commented 1 month ago

I have found the answer in the code https://github.com/yal054/mba_dl_model. Thank you