Batch upload with metadata leading into corrupted entries

[jhalkilahti]

Uploaded the fastq and metadata file. All analysis added to the files failed and one of the entries look like in the capture below. The real issue is in the metadata file but there should be a fail safe to prevent getting this far with a bad file.

[bfrgoncalves]

Are the files named correctly on the batch file and still get the error or you have files from different samples in the batch file?

[jhalkilahti]

The metadata file is the messed up one you've seen before the EFSA demo. Something is wrong with the formatting but neither of us could figure out what. Demo strains.txt

[bfrgoncalves]

The problem that you are showing with the files with different names was due to the lack of a confirmation procedure to check if the file exists on the user files folder. Because of that the strain was being submitted with the first file existing on the user folder. The problem of the failed analysis was due to the Submitter on the batch file not being the same as the current logged user. This was raising some issues on job submission. Now there is a validation step to check if the submitter on the batch file matches the current user.

[jhalkilahti]

The check for Submitter on metadata and logged user is working but now the uploaded samples look like this:

[jhalkilahti]

Also selecting any sample (by using the tick box on the left) is impossible.

[jhalkilahti]

Reloading the view the issue is resolved on it's own.

[bfrgoncalves]

I will take a look

[bfrgoncalves]

It should be ok now. Had to change the way I was mapping the headers with the data on the columns.