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bg7 / BG7

bacterial genome annotation system
bg7.ohnosequences.com
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Second round of annotation with intergenic sequences #17

Open rtobes opened 12 years ago

rtobes commented 12 years ago

To do the second round of annotation with the intergenic sequences we need that the contigs without any annotation are included in the intergenic multifasta output file. These contigs without annotation are included at the end of the GenBank format output file but not in intergenic sequence file.

Other sequences needed for this second round are the sequences flanking the contigs with only one gene.

It is needed to review if the fragment of sequences before the first gene of a contig and the fragment after the last gene of a contig are included in the intergenic sequence output file. This file must include all sequence fragments corresponding to non-genic region.

pablopareja commented 12 years ago

Ok, just two things:

  1. How prioritary is this?
  2. Should contigs without any predicted gene be included as only one whole extragenic region?
eparejatobes commented 12 years ago

I (and the fuchsia-esque label) can answer 1: improvement :)

rtobes commented 12 years ago

It is an improvement, it is not urgent. Yes, contigs without any predicted gene should be included as only one whole extragenic region. The concept of non-coding regions is more exact for the sequences of this file.