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bgilbert / anonymize-slide

Delete the label from a whole-slide image
GNU General Public License v2.0
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Aperio anonymization does not delete macro image #7

Open markemus opened 4 years ago

markemus commented 4 years ago

This is a big problem- the process deletes the label image but not the macro image, which also has a copy of the label, at least on certain scanner settings.

gregster7 commented 2 years ago

When I tested the program, it doesn't delete either for svs file.

markemus commented 2 years ago

@gregster7 check my PR here https://github.com/bgilbert/anonymize-slide/pull/6 which adds removal of macro images for aperio. Should work for svs although I wrote it for aperio tiff.

Tomatenbiss commented 1 year ago

@markemus, @gregster7: Within the EMPAIA project, we have now developed our own solution for anonymizing WSIs (in various formats). This is currently available via Gitlab . The paper for this is currently in review, the preprint can already be viewed at arXiv.

gregster7 commented 1 year ago

@Tomatenbiss This is great news! FYI arXiv link is broken - maybe typo?

Tomatenbiss commented 1 year ago

A point has snuck into the link. I fixed it, so it should work now. Just in case: https://arxiv.org/abs/2211.06103