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bgruening / docker-galaxy

:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
http://bgruening.github.io/docker-galaxy
MIT License
226 stars 134 forks source link

Document or link to documentation for installing tools #498

Open innovate-invent opened 5 years ago

innovate-invent commented 5 years ago

In the documentation here: https://github.com/bgruening/docker-galaxy-stable#extending-the-docker-image--toc

It mentions RUN install-tools $GALAXY_ROOT/my_tool_list.yml with no reference to where install-tools comes from or how to use it.

innovate-invent commented 5 years ago

Bashing into the image and reading the install-tools script, it looks like it temporarily starts galaxy and calls ephemeris' shed-tools command and passes the first parameter to shed-tools -t.

bgruening commented 3 days ago

The new 24.1 version if up! @innovate-invent any interest in writing a documentation about tool installation and testing this with the new image?

innovate-invent commented 3 days ago

Hi, I see you are cleaning up a bunch of old issues. I have moved on from my role that has me working with Galaxy a few years back. I don't really have the cycles to contribute to this on my own time. I am not sure if you are aware of the Galaxy docker containers/deployment I built out while I was working with this. They take a different approach to factoring the different components of Galaxy into containers, I am not sure if there is anything you can use there: https://github.com/brinkmanlab/galaxy-container.