Closed fgp closed 3 days ago
Thanks to @jyotipm29 we are back on track :smile: The new 24.1 image contains a lot of changes and reflects the latest developments in Galaxy. I would like to close this PR, but please feel free to reopen and rebase against the latest version.
Please give it a try:
docker run -p 8080:80 -p 8021:21 -p 4002:4002 --privileged=true -e "GALAXY_DESTINATIONS_DEFAULT=slurm_cluster_docker" -v /tmp/galaxy-data/:/export/ quay.io/bgruening/galaxy:24.1
... or any other combination. The readme has been updated. Please add any useful tip to it.
For a list of changes, see the Changelog.
Some images (e.g. on the page Manage Tools, URL
admin/repositories
) don't load correctly after launching Galaxy using the docker imagegalaxy-stable:19.09
. The problems seems to be that e.g.lib/tool_shed/galaxy_install/grids/admin_toolshed_grids.py
hardcodes the blue style by referring to%s/style/blue/ok_small.png
where %s is the static URL, i.e.static/
. But bothgalaxy.yml
andnginx.conf
already mapstatic/style
tostatic/style/blue
, and the URL thus translates to/galaxy-central/static/style/blue/blue/ok_small.png
which does not exist.I tried fixing this by changing the static-map line in galaxy.yml to read
static-map: /static/style=static/style
instead ofstatic-map: /static/style=static/style/blue
, but that didn't help -- I assume because the Docker image serves static files directly through nginx, not through uWSGI.Can I fix this through the config somehow or do I need to modify the Dockerfile to change nginx.conf?