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bgruening / docker-galaxy

:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
http://bgruening.github.io/docker-galaxy
MIT License
226 stars 134 forks source link

Docker-galaxy doesn't work #583

Closed deoliveiralf closed 3 days ago

deoliveiralf commented 3 years ago

Hello dears, I novel on bioinformatic jobs. I have tried to install docker-galaxy, however, is there a problem that doesn't work correctly. When I run docker exec gracious_elbakyan supervisorctl status, it returns: lfdeoliveira@Biocel:~$ docker exec gracious_elbakyan supervisorctl status autofs FATAL Exited too quickly (process log may have details) condor RUNNING pid 819, uptime 0:03:27 cron RUNNING pid 698, uptime 0:03:43 docker STOPPED Not started galaxy:galaxy_nodejs_proxy RUNNING pid 749, uptime 0:03:33 galaxy:galaxy_web FATAL Exited too quickly (process log may have details) galaxy:handler0 FATAL Exited too quickly (process log may have details) galaxy:handler1 FATAL Exited too quickly (process log may have details) nginx RUNNING pid 114, uptime 0:04:10 postgresql RUNNING pid 563, uptime 0:04:05 proftpd RUNNING pid 706, uptime 0:03:41 rabbitmq RUNNING pid 115, uptime 0:04:10 reports RUNNING pid 770, uptime 0:03:32

and the localhost:8080 returns 403 Forbidden

any idea what happens? Thanks so much

benjaminbrumbaugh commented 3 years ago

I'm also getting this error along with the database migration error here: https://github.com/bgruening/docker-galaxy-stable/issues/575

They may be related

benjaminbrumbaugh commented 3 years ago

Also looks to be the same as: https://github.com/bgruening/docker-galaxy-stable/issues/571

bgruening commented 3 days ago

Thanks to @jyotipm29 we are back on track :smile: The new 24.1 image contains a lot of changes and reflects the latest developments in Galaxy. I would like to close this PR, but please feel free to reopen and rebase against the latest version.

Please give it a try:

docker run -p 8080:80 -p 8021:21 -p 4002:4002 --privileged=true -e "GALAXY_DESTINATIONS_DEFAULT=slurm_cluster_docker"   -v /tmp/galaxy-data/:/export/ quay.io/bgruening/galaxy:24.1

... or any other combination. The readme has been updated. Please add any useful tip to it.

For a list of changes, see the Changelog.