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bgruening / docker-galaxy

:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.
http://bgruening.github.io/docker-galaxy
MIT License
226 stars 134 forks source link

run task failure: Error in lock(.sql_lock_path(dbfile), exclusive = exclusive) : Cannot open lock file: Permission denied #606

Closed mega-bisharp closed 3 days ago

mega-bisharp commented 11 months ago

I want add my R script file to tools, but it can't work normally, and raise error: Error in lock(.sql_lock_path(dbfile), exclusive = exclusive) : Cannot open lock file: Permission denied 屏幕截图 2023-12-05 161231

but it can work in the docker 's bash . image

this is mytools file, what should I do to fix this error? CEL.zip Thank you very much!

bgruening commented 3 days ago

Thanks to @jyotipm29 we are back on track :smile: The new 24.1 image contains a lot of changes and reflects the latest developments in Galaxy. I would like to close this PR, but please feel free to reopen and rebase against the latest version.

Please give it a try:

docker run -p 8080:80 -p 8021:21 -p 4002:4002 --privileged=true -e "GALAXY_DESTINATIONS_DEFAULT=slurm_cluster_docker"   -v /tmp/galaxy-data/:/export/ quay.io/bgruening/galaxy:24.1

... or any other combination. The readme has been updated. Please add any useful tip to it.

For a list of changes, see the Changelog.