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bgruening / galaxytools

:microscope::books: Galaxy Tool wrappers
MIT License
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Issue with main galaxy tool- tRNA_prediction #1005

Open herbercr opened 4 years ago

herbercr commented 4 years ago

There is an error occurring when I run tRNAscan 4.0. It seems to do with the biopython dependency. The python script runs outside of galaxy so I am unsure of what the issue is.

Problem:

Tools errors in python script. All dependencies are installed, specifically biopython in which the error occurs with no module found.

Error: Traceback (most recent call last): File "/mnt/c/galaxy/database/shed_tools/toolshed.g2.bx.psu.edu/repos/bgruening/trna_prediction/358f58401cd6/trna_prediction/tRNAscan.py", line 7, in <module> from Bio import SeqIO ModuleNotFoundError: No module named 'Bio'

jennaj commented 4 years ago

Not sure if resolved -- both may be orphan tickets we can closeout.

@herbercr please see the other issue ticket, it has more details about how we can troubleshoot if still a problem.