Closed gallardoalba closed 1 year ago
When providing a collection of paired-end read as input, Salmon works in that way:
salmon quant --index './index' --libType A --unmatedReads <(zcat < ./single.fastq) "
However, it should work as follow:
salmon quant -i transcripts_index -l <LIBTYPE> -1 reads1.fq -2 reads2.fq
When providing a collection of paired-end read as input, Salmon works in that way:
salmon quant --index './index' --libType A --unmatedReads <(zcat < ./single.fastq) "However, it should work as follow:
salmon quant -i transcripts_index -l <LIBTYPE> -1 reads1.fq -2 reads2.fq