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bgruening / galaxytools

:microscope::books: Galaxy Tool wrappers
MIT License
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gfastats: 1.3.6 version bump #1276

Closed abueg closed 1 year ago

abueg commented 1 year ago

hello! version bump for gfastats to version 1.3.6 🧬

abueg commented 1 year ago

ah wait!! let me add the new flag to the tool wrapper before merging the PR, please 😅 almost forgot about that

bgruening commented 1 year ago

Linting also got stricter and fails now ;-)

abueg commented 1 year ago

ah i thought that was because the conda update isn't available yet, but either way i will edit the wrapper today 🫡

abueg commented 1 year ago

edited test 1 since the SAK file wasn't actually properly pointing to the contig to be removed, so the output and input ended up effectively the same; this should now actually be checking for the SAK functionality

some weirdness though in that tests 1 & 8 are recurrently failing when testing on my M1 Mac, but the tests work fine on github actions. test 1 on my M1 Mac results in a very malformed FASTA output when converting from FASTQ.GZ, but the same file gunzipped and used as a FASTQ results in an expected FASTA

bgruening commented 1 year ago

Thanks a lot!