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bgruening / galaxytools

:microscope::books: Galaxy Tool wrappers
MIT License
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Add AGAT tool #1310

Closed gallardoalba closed 1 year ago

gallardoalba commented 1 year ago

AGAT has the power to check, fix, pad missing information (features/attributes) of any kind of GTF and GFF to create complete, sorted and standardised gff3 format. Over the years it has been enriched by many many tools to perform just about any tasks that is possible related to GTF/GFF format files (sanitizing, conversions, merging, modifying, filtering, FASTA sequence extraction, adding information, etc). Comparing to other methods AGAT is robust to even the most despicable GTF/GFF files.

Source: https://github.com/NBISweden/AGAT

abretaud commented 1 year ago

Looks cool, any reason not to push it to iuc?

gallardoalba commented 1 year ago

Looks cool, any reason not to push it to iuc?

Not really, just because it includes a few more functionalities that I didn't include. So it is not complete.

gallardoalba commented 1 year ago

Do you think any of the missing functions could be interesting for you @abretaud? I can include them if needed.